Sediment deposition is a natural process that occurs in all reservoirs, resulting in significant storage loss, which has an adverse effect on the economic development of the local area. It is necessary to take appropriate action to control the sedimentation and prevent loss of the storage capacity of the reservoir. In the present study, runoff and sediment data collected at the Konijerla hydrometric station of Wyra reservoir for the period of 1991 to 2019 are used. Data from 2011 to 2016 is used to calibrate and the data from 2017 to 2019 is used to validate the SWAT model. The Wyra watershed consists of 26 sub-basins and 47 HRUs (Hydrological Response Units). Out of these sub-basins, one of the sub-basins is contributing 18.8% of sedimentation. It was also observed that two other sub-basins, though less in area, generate high sediments. Seasonal sediment analysis showed that sedimentation increased by 12% in the month of August for wet years. Overall sedimentation increased in wet years by 10.60% and in dry years, it decreased by 18.78%. The SWAT model was satisfactory in the calibration and validation periods for various parameters used. Hence, this model can be used for sedimentation study, as well as a planning tool in the reservoir capacity management.